PubMed Search Scraper

PubMed Search Scraper

by easyapi

Scrape research papers and academic articles from PubMed based on search terms. Extract comprehensive article metadata including titles, authors, cita...

429 runs
48 users
Try This Actor

Opens on Apify.com

About PubMed Search Scraper

Scrape research papers and academic articles from PubMed based on search terms. Extract comprehensive article metadata including titles, authors, citations, abstracts, and more. Perfect for medical research and literature reviews.

What does this actor do?

PubMed Search Scraper is a web scraping and automation tool available on the Apify platform. It's designed to help you extract data and automate tasks efficiently in the cloud.

Key Features

  • Cloud-based execution - no local setup required
  • Scalable infrastructure for large-scale operations
  • API access for integration with your applications
  • Built-in proxy rotation and anti-blocking measures
  • Scheduled runs and webhooks for automation

How to Use

  1. Click "Try This Actor" to open it on Apify
  2. Create a free Apify account if you don't have one
  3. Configure the input parameters as needed
  4. Run the actor and download your results

Documentation

PubMed Search Scraper 🔬 ## 📋 Overview Extract academic articles and research papers from PubMed, the world's leading database of biomedical literature. This actor allows you to scrape detailed information from search results based on your keywords. ## ✨ Features - 🔎 Scrape articles based on custom search queries - 📑 Extract comprehensive article metadata: - Title and article ID - Full & short author lists - Complete & abbreviated journal citations - PMID (PubMed Identifier) - Article tags and types - Full & truncated abstracts - Social sharing links - ⚡ High-performance scrolling pagination - 🛡️ Built-in anti-blocking measures - 🎯 Configurable maximum items limit ## 💡 Use Cases - Medical research and literature reviews - Academic meta-analyses - Tracking research trends - Building research databases - Bibliometric analysis - Scientific data mining ## 📤 Output The actor outputs detailed article information in JSON format, including: - Article title and unique identifier - Author information (full and short formats) - Journal citation details - PMID reference - Article type tags - Abstract content - Social sharing links ## 💪 Tips for Optimal Usage 1. Use specific search terms for more targeted results 2. Consider breaking large searches into smaller queries 3. Allow sufficient run time for larger result sets 4. Monitor your usage to stay within PubMed's guidelines ## 🔗 Links - PubMed Home - Search Syntax Guide ### Input Example A full explanation of an input example in JSON. { "searchUrls": ["https://pubmed.ncbi.nlm.nih.gov/?term=rheumatoid%20arthritis"], "maxItems": 30 } ### Output sample The results will be wrapped into a dataset which you can always find in the Storage tab. Here's an excerpt from the data you'd get if you apply the input parameters above: And here is the same data but in JSON. You can choose in which format to download your data: JSON, JSONL, Excel spreadsheet, HTML table, CSV, or XML. [ { "title": "Rheumatoid arthritis.", "articleId": "27156434", "articleUrl": "https://pubmed.ncbi.nlm.nih.gov/27156434/", "authors": { "full": "Smolen JS, Aletaha D, McInnes IB.", "short": "Smolen JS, et al." }, "citation": { "full": "Lancet. 2016 Oct 22;388(10055):2023-2038. doi: 10.1016/S0140-6736(16)30173-8. Epub 2016 May 3.", "short": "Lancet. 2016." }, "pmid": "27156434", "tags": [ "Free article.", "Review." ], "abstract": { "full": "Rheumatoid arthritis is a chronic inflammatory joint disease, which can cause cartilage and bone damage as well as disability. ...In this Seminar, we describe current insights into genetics and aetiology, pathophysiology, epidemiology, assessment, therapeutic agents …", "short": "Rheumatoid arthritis is a chronic inflammatory joint disease, which can cause cartilage and bone damage as well as disability. …" }, "shareLinks": { "twitter": "http://twitter.com/intent/tweet?text=Rheumatoid%20arthritis.%20https%3A//pubmed.ncbi.nlm.nih.gov/27156434/", "facebook": "http://www.facebook.com/sharer/sharer.php?u=https%3A//pubmed.ncbi.nlm.nih.gov/27156434/", "permalink": "https://pubmed.ncbi.nlm.nih.gov/27156434/" } }, { "title": "Management of Rheumatoid Arthritis: An Overview.", "articleId": "34831081", "articleUrl": "https://pubmed.ncbi.nlm.nih.gov/34831081/", "authors": { "full": "Radu AF, Bungau SG.", "short": "Radu AF, et al." }, "citation": { "full": "Cells. 2021 Oct 23;10(11):2857. doi: 10.3390/cells10112857.", "short": "Cells. 2021." }, "pmid": "34831081", "tags": [ "Free PMC article.", "Review." ], "abstract": { "full": "Rheumatoid arthritis (RA) is a multifactorial autoimmune disease of unknown etiology, primarily affecting the joints, then extra-articular manifestations can occur. ...", "short": "Rheumatoid arthritis (RA) is a multifactorial autoimmune disease of unknown etiology, primarily affecting the joints, then ext …" }, "shareLinks": { "twitter": "http://twitter.com/intent/tweet?text=Management%20of%20Rheumatoid%20Arthritis%3A%20An%20Overview.%20https%3A//pubmed.ncbi.nlm.nih.gov/34831081/", "facebook": "http://www.facebook.com/sharer/sharer.php?u=https%3A//pubmed.ncbi.nlm.nih.gov/34831081/", "permalink": "https://pubmed.ncbi.nlm.nih.gov/34831081/" } }, ... ]

Categories

Common Use Cases

Market Research

Gather competitive intelligence and market data

Lead Generation

Extract contact information for sales outreach

Price Monitoring

Track competitor pricing and product changes

Content Aggregation

Collect and organize content from multiple sources

Ready to Get Started?

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Actor Information

Developer
easyapi
Pricing
Paid
Total Runs
429
Active Users
48
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